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How do you know the amox is not working? Taking amox to eradicate H pylori would not be expected to help any symptoms while the antibiotic is being taken. Only after she finishes the H pylori treatment (which should be 2 antibiotics + PPI) would you know if amox worked by doing a test to see if the H pylori is gone.
If she has GI symptoms, one must be careful to attribute those symptoms to H pylori. Most H pylori infections do not cause any symptoms at all, and in these cases eradicating H pylori will not result in any change of symptoms. Another cause for GI symptoms would need to be sought.